The application documents would possibly need to be corrected if a warm and a cold zone are to be created within the basement. I would wait to see if the building authority criticizes the "missing" basement door - from my perspective, it is not missing if the basement is included within the thermal envelope. Whether some of these rooms are actually not heated afterwards is, in my opinion, a private matter. I wouldn’t make a fuss about it now.
In general, execution planning takes time depending on the complexity of the details. Have you already opened kitchen and bathroom threads?
As a precaution, I would estimate about eight weeks, since there are some non-standard spots. For everything that the general contractor has as standard (floor/intermediate ceiling constructions, floor hatch, straight lintels, etc.), he will also have templates. Corner window lintels, bay roofs, and for example the material change in the wall where the intermediate door might be retrofitted, on the other hand, have to be freshly drawn and take more time. Also, integrated beams (however I am supposed to imagine them) and all places with "Isokörbe" must be planned individually. And the installation (pre)walls in the bathrooms take longer the more often they are redesigned.