Okay, so the municipality necessarily finds out about it and can still exercise the option, but only by buying into the entire purchase. They would hardly want to do that because they are not interested in the building plot area and cannot afford to acquire it in order to separate the traffic area from it.
I also wonder how/whether it works to "grab" just one of the two areas from the land register.
That will not work. The OP should clarify this for us – I suspect I have misunderstood something:
The plot itself has a size of 543 sqm and additionally you acquire a 108 sqm traffic area.
I had interpreted this to mean a 651 sqm plot with a 108 sqm traffic area, but especially the remark
She wants to grant us a right of use for it.
also allows the interpretation that the mentioned plot has a total of 543 sqm for building and there is a 108 sqm share in a traffic area that runs across several plots, which the seller holds separately and only wants to grant a right of use (GFL) over it. So this is now the question: are the mentioned 108 sqm a) a GFL area on the desired plot that is not marked as a parcel; or the seller’s share in a private shared road, which b) is not marked as an independent parcel or c) represents an independent parcel?
And: can the OP waive this use because his future plot also borders the public road and can be developed and accessed without including this traffic area, so that he would lose no more than a GFL right acquired but not strictly needed?
Without corresponding clarification, further speculation would probably be the proverbial quarrel about the Emperor’s beard.