It says that the roof of the house must be a gable or a half-hipped roof; and if one wants to have the garage or the carport including the garbage bin and lawnmower outbuilding with a flat roof instead, it has to be greened. Apparently, as a layman (but why the contractor too?), you have misinterpreted this, thinking that with green roofing the main roof can also be flat – but you won't get away with that.
I don't necessarily see it as clearly as you do. Unlike the OP, you highlighted the other part of the sentence in bold; if you read it as in the OP’s questionnaire, the exception is not limited to an outbuilding:
"As roof types, gable and half-hipped roofs are permitted for the main roof surfaces – garages and auxiliary buildings
and greened roofs are exempt from this."
According to your interpretation, it should rather say ...garages and auxiliary buildings with green roofs... or something similar.
If the authority's answer is positive, then:
I don’t think the ground floor is bad, relatively generous entrance area, good orientation of the rooms, staircase not in the dirty area... fits.
What I would change: remove the pantry and enlarge the kitchen, enlarge the guest WC to a real children’s bathroom. If the two children’s rooms are to be put to use, they are simply too small!
I can well understand the wish for a separate "parents" area; we also tried to solve that at least in principle, and every evening when I open the door to go to bed I am happy about the separated zone including the ensuite bathroom... it works.
But: please arrange it differently! The corridor will never be a dressing room, it will always remain a corridor. Given these space conditions, there should be a better solution. Do you need a 12 sqm bathroom for two people? Probably not. You can well take something from it and add it to the dressing room, but overall please do it differently...
Last but unfortunately not least: the budget will not be enough. At least with this equipment and building form I don’t see 450k all in. Do you have a buffer or can you do some work yourselves? Then it might (wasn’t it Lower Saxony, where it is somewhat cheaper in the countryside?!) be possible.