Better to plan for too many costs than too few. Because as it was, at least the overall calculation didn't suffer; it might even have eased. How many square meters are we talking about? I mean, in the end the construction company charges according to performance, a few too many ordered pallets of clinker can't have led to the project being aborted? Leave them for the garage, garden house & co. or sell them off on E.-Kleinanzeigen.
I would always be cautious with such stories. Of course, everyone else is always to blame.
PS: we also have 10-20 tons of frost protection material too much on the construction site that we have to pay for due to a slight overestimation by the general contractor. But I prefer it this way around rather than the other way and a surprising additional charge along the lines of: we need more, otherwise it can't go on, costs xxxx€. Take it or leave it.