So honestly, that is definitely not normal. Not even specifically with timber frame construction. Our timber frame house has never had a single mold infestation, neither before nor after the screed. By the way, ventilating twice a day after the screed during the heating phase is clearly too little. 4-5 times 15 minutes of cross-ventilation... otherwise you certainly won't get the moisture out.
Yes, mold needs moisture and nutrients to survive, but it doesn't just appear overnight, so either there was already mold at the factory beforehand or you have had unnoticed high humidity in the house for a longer time.
greetz Ecko